<?xml version="1.0" encoding="UTF-8" ?>
<data>
   <organism>Saccharomyces cerevisiae</organism>
   <path>.\data</path>
   <files>
     <input>
       <SBO>sbo_id.txt</SBO>
       <GO>go_id.txt</GO>
       <EC>EC.txt</EC>
       <PubMed>PubMed_IDs.txt</PubMed>
       <PMC>PMC_IDs.txt</PMC>
     </input>
     <output>
       <GO>go_terms.txt</GO>
       <SBO>sbo_terms.txt</SBO>
       <KEGG>
         <enzyme>EC.txt</enzyme>
         <compound>CPD.txt</compound>
         <gene>SCE.txt</gene>
         <enzyme_name>EC_name.txt</enzyme_name>
         <compound_name>CPD_name.txt</compound_name>
         <gene_name>SCE_name.txt</gene_name>
         <enzyme2compound>EC_CPD.txt</enzyme2compound>
         <enzyme2gene>EC_SCE.txt</enzyme2gene>
       </KEGG>
       <UMLS>umls_terms.txt</UMLS>
       <PubMed>PubMed_index.txt</PubMed>
       <PMC>PMC_index.txt</PMC>
       <HTML>
         <PubMed>PubMed.html</PubMed>
         <PMC>PMC.html</PMC>
         <items>20</items>
         <max>25</max>
       </HTML>
       <bibtex>
         <PubMed>PubMed.bib</PubMed>
         <PMC>PMC.bib</PMC>
       </bibtex>
     </output>
     <tmp>
       <GO>ajaxGO.xml</GO>
       <UMLS>queryUMLS.xml</UMLS>
       <terms>termsUMLS.xml</terms>
       <PubMed>PubMed_IDs.txt</PubMed>
       <PMC>PMC_IDs.txt</PMC>
     </tmp>
     <template>
       <UMLS>queryUMLS.xml</UMLS>
     </template>
   </files>
   <database>
     <driver>org.postgresql.Driver</driver>
     <url>jdbc:postgresql://********</url>
     <username>********</username>
     <password>********</password>
   </database>
   <pubchem>
     <driver>org.postgresql.Driver</driver>
     <url>jdbc:postgresql://********</url>
     <username>********</username>
     <password>********</password>
   </pubchem>
   <UMLS>
     <dbYear>2008AA</dbYear>
     <language>ENG</language>
     <host>umlsks.nlm.nih.gov</host>
   </UMLS>
   <params>
     <keywords>(((brewer OR baker OR budding) AND yeast) OR ((S OR Saccharomyces) AND cerevisiae)) AND (enzyme OR reaction OR substrate OR product) AND (kinetic OR parameter OR constant OR concentration OR rate)</keywords>
     <weights>
       <EC>60</EC>
       <CPD>30</CPD>
       <SCE>10</SCE>
       <RN>80</RN>
       <GO>20</GO>
       <PATH>50</PATH>
       <SBO>50</SBO>
     </weights>
   </params>
   <options>
     <database>both</database>
     <search>yes</search>
     <export>
       <HTML>yes</HTML>
       <bibtex>yes</bibtex>
       <fullText>yes</fullText>
       <tags>
       </tags>
     </export>
     <menu>
       <start>8 - Export results</start>
       <end>8 - Export results</end>
     </menu>
   </options>
 </data>

