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Manchester Centre for Integrative Systems Biology

Software


The following software have been produced through research activities in which the MCISB has been involved:

Pride Wizard

Enables the submission of mass spectrometry data and Mascot identifications to generate a valid PRIDE XML file.


CV expand

CV expand is a text mining tool for automatic expansion of controlled vocabularies as a practical alternative to tailor-made named entity recognition methods.


KiPar

KiPar is a dedicated information retrieval system designed to facilitate access to the literature relevant for kinetic modelling of a given metabolic pathway in yeast.


PUTMEDID-LCMS

PUTMEDID-LCMS is a tool operating in the Taverna environment for putative identification of metabolites from accurate mass data acquired in mass spectrometry-based metabolic profiling studies.